Articles by Ulysse Herbach | Synthical

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Articles by Ulysse Herbach

Efficient stochastic simulation of gene regulatory networks using hybrid models of transcriptional bursting

18 August 2025 by Mathilde Gaillard and Ulysse Herbach at

Inria Rocquencourt

Molecular Networks, Probability

Harissa: stochastic simulation and inference of gene regulatory networks based on transcriptional bursting

10 September 2023 by Ulysse Herbach

Molecular Networks, Quantitative Methods

Universality of cell differentiation trajectories revealed by a reconstruction of transcriptional uncertainty landscapes from single-cell transcriptomic data

20 July 2023 by N. Gao and others

One model fits all: combining inferenceand simulation of gene regulatorynetworks

27 March 2023 by Elias Ventre and others

Systems Biology

Gene regulatory network inference from single-cell data using a self-consistent proteomic field

30 September 2021 by Ulysse Herbach at

Inria Rocquencourt

Molecular Networks

Stochastic gene expression with a multistate promoter: breaking down exact distributions

1 August 2019 by Ulysse Herbach

Probability, Molecular Networks

WASABI: a dynamic iterative framework for gene regulatory network inference

2 May 2019 by Arnaud Bonnaffoux and others

Systems Biology

Inferring gene regulatory networks from single-cell data: a mechanistic approach

24 May 2017 by Ulysse Herbach and others

Molecular Networks

Articles by Ulysse Herbach | Synthical