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Articles by Chenchen Ye

A Systematic Examination of Generative Artificial Intelligence (GAI) Usage Guidelines for Scholarly Publishing in Medical Journals
11 February 2025 by Siyuan Yin and others at LogoColumbia University
Medical Ethics
GPN-MSA: an alignment-based DNA language model for genome-wide variant effect prediction
2 January 2025 by G. Benegas and others at LogoUC Berkeley
Bioinformatics
Replication Kinetics, Pathogenicity and Virus-induced Cellular Responses of Cattle-origin Influenza A(H5N1) Isolates from Texas, United States
27 December 2024 by Aly Mostafa and others
Microbiology
Sexual Dimorphism in Age-Dependent Neurodegeneration After Mild Head Trauma in Drosophila: Unveiling the Adverse Impact of Female Reproduction
30 August 2024 by Chunxiao Ye and others
Neuroscience
Cellular N-myristoyl transferases Are Required for Mammarenavirus Multiplication
26 August 2024 by H. Witwit and others at LogoScripps Research Institute
Microbiology
Suppression of Edge Localized Modes in ITER Baseline Scenario in EAST using Edge Localized Magnetic Perturbations
6 August 2024 by Pengjun Xie and others
Plasma Physics
A Comprehensive Evaluation of Large Language Models on Temporal Event Forecasting
16 July 2024 by He Chang and others
Computation and Language, Information Retrieval
Bacterial exonuclease III expands its enzymatic activities on single-stranded DNA
3 July 2024 by Huamin Wang and others at LogoZhejiang University
Biochemistry
MIRAI: Evaluating LLM Agents for Event Forecasting
1 July 2024 by Chenchen Ye and others at LogoUC Los Angeles
Computation and Language, Artificial Intelligence
CliBench: Multifaceted Evaluation of Large Language Models in Clinical Decisions on Diagnoses, Procedures, Lab Tests Orders and Prescriptions
14 June 2024 by Mingyu Derek Ma and others
Computation and Language, Artificial Intelligence
Analyzing Temporal Complex Events with Large Language Models? A Benchmark towards Temporal, Long Context Understanding
4 June 2024 by Zhihan Zhang and others
Computation and Language
Demuxafy: Improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods
15 April 2024 by D. Neavin and others
Genomics
SCTc-TE: A Comprehensive Formulation and Benchmark for Temporal Event Forecasting
3 April 2024 by Yunshan Ma and others
Information Retrieval, Computation and Language
The SARS-CoV-2 Spike is a virulence determinant and plays a major role on the attenuated phenotype of Omicron virus in a feline model of infection
29 February 2024 by Matheus Martins and others
Microbiology
Context-aware Event Forecasting via Graph Disentanglement
12 August 2023 by Yunshan Ma and others
Information Retrieval
A new tractable method for generating Human Alveolar Macrophage Like cells in vitro to study lung inflammatory processes and diseases
8 June 2023 by S. Pahari and others
Immunology
Extension of ELM suppression window using n=4 RMPs in EAST
10 April 2023 by Pengjun Xie and others
Plasma Physics
Posteromedial thalamic nucleus activity significantly contributes to perceptual discrimination
28 November 2022 by Jianhan Qi and others
Neuroscience
A Survey on Methods for Predicting Polyadenylation Sites from DNA Sequences, Bulk RNA-seq, and Single-cell RNA-seq
24 September 2022 by Weining Ye and others at LogoSuzhou University
Bioinformatics
Monitoring SARS-CoV-2 infection using a double reporter-expressing virus
18 August 2022 by K. Chiem and others
Microbiology
A pore-forming protein drives macropinocytosis to facilitate toad water maintaining
22 July 2022 by Zihua Zhao and others
Cell Biology
matOptimize: A parallel tree optimization method enables online phylogenetics for SARS-CoV-2
22 June 2022 by Chunxiao Ye and others at LogoUC San Diego
Evolutionary Biology
A SARS-CoV-2 nucleocapsid protein TR-FRET assay amenable to high-throughput screening
3 January 2022 by Kirill Gorshkov and others
Pharmacology and Toxicology
Interleukin-6 mediates PSAT1 expression and serine metabolism in TSC2-deficient cells
20 September 2021 by Jinbiao Wang and others
Pathology
Molecular basis for kinin selectivity and activation of the human bradykinin receptors
9 September 2021 by Y. -L. Yin and others
Biophysics
Molecular insights into differentiated ligand recognition of the human parathyroid hormone receptor 2
5 August 2021 by Xun Wang and others
Biochemistry
Genetic depletion studies define receptor usage by virulent hantaviruses in human endothelial cells
6 July 2021 by M. Dieterle and others
Microbiology
Remdesivir inhibits renal fibrosis in obstructed kidneys
2 July 2021 by Mingxin Wu and others
Pharmacology and Toxicology
Molecular insights into ago-allosteric modulation of the human glucagon-like peptide-1 receptor
18 June 2021 by Zheng Cong and others
Molecular Biology
Contribution of SARS-CoV-2 accessory proteins to viral pathogenicity in K18 hACE2 transgenic mice
16 June 2021 by J. Silvas and others
Microbiology
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