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Articles by Alice Allen

Ten (or more!) reasons to register your software with the Astrophysics Source Code Library
7 January 2025 by Alice Allen and Kimberly Duprie
Instrumentation and Methods for Astrophysics, Digital Libraries
Ankyrin-B is required for the establishment and maintenance of lens cytoarchitecture, mechanics, and clarity
19 November 2024 by R. Maddala and others
Cell Biology
I feel your pain: Higher empathy is associated with higher posterior default mode network activity
2 October 2024 by Vincenzo Oliva and others at LogoUC San Diego
Neuroscience
Improving the visibility and citability of exoplanet research software
28 December 2023 by Alice Allen and others
Instrumentation and Methods for Astrophysics
Localizing Rare-Variant Association Regions via Multiple Testing Embedded in an Aggregation Tree
28 November 2023 by Xijiao Li and others at LogoDuke University
Genetics
A DNA Unwinding Equilibrium Serves as a Checkpoint for CRISPR-Cas12a Target Discrimination
31 July 2023 by Jaikirat Singh and others at LogoUniversity of Southern California
Biochemistry
Machine learning potentials with Iterative Boltzmann Inversion: training to experiment
10 July 2023 by Sakib Matin and others
Applied Physics
Improving de novo Protein Binder Design with Deep Learning
6 May 2023 by Nick Bennett and others at LogoUniversity of Washington
Bioengineering
Global shortfalls in extinction risk assessments for endemic flora
20 April 2023 by R. Gallagher and others at LogoMacquarie University
Ecology
Structure of a HIV-1 IN-Allosteric Inhibitor Complex at 2.93 Angstrom Resolution: Routes to Inhibitor Optimization
3 March 2023 by Gerrit Eilers and others
Biochemistry
Nucleotide metabolism is linked to cysteine availability
17 February 2023 by Angela Allen and others at LogoDuke University
Cell Biology
It's your software! Get it cited the way you want!
24 December 2022 by Alice Allen
Instrumentation and Methods for Astrophysics
Using the Astrophysics Source Code Library: Find, cite, download, parse, study, and submit
24 December 2022 by Alice Allen
Instrumentation and Methods for Astrophysics
Advancing the Landscape of Multimessenger Science in the Next Decade
18 March 2022 by Kristi Engel and others
High Energy Astrophysical Phenomena, Cosmology and Nongalactic Astrophysics
The Future of Gamma-Ray Experiments in the MeV-EeV Range
14 March 2022 by Kristi Engel and others
High Energy Astrophysical Phenomena, Instrumentation and Methods for Astrophysics
SciCodes: Astronomy Research Software and Beyond
29 November 2021 by Alice Allen
Instrumentation and Methods for Astrophysics, Digital Libraries
Citation method, please? A case study in astrophysics
24 November 2021 by Alice Allen
Instrumentation and Methods for Astrophysics, Digital Libraries
Phylodynamic analysis of an emergent Mycobacterium bovis outbreak in an area with no previously known wildlife infections
2 November 2021 by Giacomo Rossi and others
Ecology
Linear Atomic Cluster Expansion Force Fields for Organic Molecules: beyond RMSE
12 October 2021 by David Peter Kovacs and others at LogoUniversity of Cambridge
Machine Learning, Computational Chemistry and Modeling
Development and Validation of a Convolutional Neural Network Model for ICU Acute Kidney Injury Prediction
26 February 2021 by Sangkyung Le and others
Health Informatics
Nine Best Practices for Research Software Registries and Repositories: A Concise Guide
24 December 2020 by Task Force On Best Practices For Software Registries and others at LogoCERN
Digital Libraries, Computers and Society
Making organizational software easier to find in ASCL and ADS
23 December 2020 by Alice Allen and others
Instrumentation and Methods for Astrophysics, Digital Libraries
Atomic Permutationally Invariant Polynomials for Fitting Molecular Force Fields
23 October 2020 by Alice Allen and others
Chemical Physics, Computational Physics
Modelling Flexible Protein-Ligand Binding in p38α MAP Kinase using the QUBE Force Field
11 October 2019 by Joshua Horton and others at LogoNewcastle University
Computational Chemistry and Modeling, Theory
Development and Validation of the QUBE Protein Force Field
23 July 2019 by Alice Allen and others at LogoNewcastle University
Computational Chemistry and Modeling, Theory
Astro2020 APC White Paper: Elevating the Role of Software as a Product of the Research Enterprise
15 July 2019 by Arfon Smith and others
Instrumentation and Methods for Astrophysics
Pupil responses to hidden photoreceptor-specific modulations in movies
9 May 2019 by M. Spitschan and others at LogoUniversity of Oxford
Neuroscience
Availability of Hyperlinked Resources in Astrophysics Papers
20 March 2019 by P. Wesley Ryan and others
Instrumentation and Methods for Astrophysics, Digital Libraries
QUBEKit: Automating the Derivation of Force Field Parameters from Quantum Mechanics
11 February 2019 by Joshua Horton and others at LogoNewcastle University
Computational Chemistry and Modeling, Theory
Improved Pathogenic Variant Localization using a Hierarchical Model of Sub-regional Intolerance
18 January 2019 by T. Hayeck and others
Genetics
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