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J. L. Steenwyk
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25
Characterization of Genome-wide Phylogenetic Conflict Uncovers Evolutionary Modes of Carnivorous Fungi
29 August 2024 by
weichen zhang
and
others
Evolutionary Biology
Gene loss and cis-regulatory novelty shaped core histone gene evolution in the apiculate yeast Hanseniaspora uvarum
25 January 2024 by
M. A. B. Haase
and
others
Evolutionary Biology
orthoSNAP: a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
13 October 2022 by
J. Steenwyk
and
others
at
Vanderbilt University
Evolutionary Biology
Examination of genome-wide ortholog variation in clinical and environmental isolates of the fungal pathogen Aspergillus fumigatus
29 June 2022 by
M. A. C. Horta
and
others
at
University of São Paulo
Bioinformatics
BioKIT: a versatile toolkit for processing and analyzing diverse types of sequence data
10 May 2022 by
J. Steenwyk
and
others
at
Vanderbilt University
Bioinformatics
A gene coevolution network provides insight into eukaryotic cellular and genomic structure and function
4 May 2022 by
J. Steenwyk
and
others
at
Vanderbilt University
Evolutionary Biology
Resistance-guided mining of bacterial genotoxins defines a family of DNA glycosylases
21 March 2022 by
N. Bradley
and
others
at
Vanderbilt University
Molecular Biology
Regulation of gliotoxin biosynthesis and protection in Aspergillus species
18 January 2022 by
P. A. De Castro
and
others
Microbiology
Examination of gene loss in the DNA mismatch repair pathway and its mutational consequences in a fungal phylum
23 September 2021 by
M. Phillips
and
others
at
Vanderbilt University
Evolutionary Biology
Genomic and phenotypic analysis of COVID-19-associated pulmonary aspergillosis isolates of Aspergillus fumigatus
9 June 2021 by
J. Steenwyk
and
others
at
Vanderbilt University
Microbiology
An evolutionary genomic approach reveals both conserved and species-specific genetic elements related to human disease in closely related Aspergillus fungi
4 May 2021 by
M. Mead
and
others
at
Vanderbilt University
Evolutionary Biology
Signatures of optimal codon usage predict metabolic ecology in budding yeasts
19 April 2021 by
A. Labella
and
others
at
Vanderbilt University
Evolutionary Biology
A genome-scale phylogeny of Fungi; insights into early evolution, radiations, and the relationship between taxonomy and phylogeny
18 February 2021 by
Yuanheng Li
and
others
at
Vanderbilt University
Evolutionary Biology
PhyKIT: a UNIX shell toolkit for processing and analyzing phylogenomic data
9 February 2021 by
J. Steenwyk
and
others
at
Vanderbilt University
Evolutionary Biology
ClipKIT: a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
2 December 2020 by
J. Steenwyk
and
others
at
Vanderbilt University
Evolutionary Biology
Feature Frequency Profile-based phylogenies are inaccurate
24 November 2020 by
Yuanheng Li
and
others
at
Vanderbilt University
Evolutionary Biology
Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota
5 November 2020 by
Xing-Xing Shen
and
others
at
Vanderbilt University
Evolutionary Biology
Aspergillus fumigatus G-protein coupled receptors GprM and GprJ are important for the regulation of the cell wall integrity pathway, secondary metabolite production, and virulence
6 October 2020 by
A. P. Da Costa Filho
and
others
Microbiology
Recurrent loss of abaA, a master regulator of asexual development in filamentous fungi, correlates with changes in genomic and morphological traits
19 May 2020 by
M. Mead
and
others
at
Vanderbilt University
Evolutionary Biology
Genomic and phenotypic heterogeneity of clinical isolates of the human pathogens Aspergillus fumigatus, Aspergillus lentulus and Aspergillus fumigatiaffinis
12 May 2020 by
R. A. C. Santos
and
others
at
Vanderbilt University
Microbiology
Functional characterization of clinical isolates of the opportunistic fungal pathogen Aspergillus nidulans
7 April 2020 by
R. Bastos
and
others
Microbiology
Gliotoxin, a known virulence factor in the major human pathogen Aspergillus fumigatus, is also biosynthesized by the non-pathogenic relative A. fischeri
11 February 2020 by
S. Knowles
and
others
at
Vanderbilt University
Microbiology
Variation and selection on codon usage bias across an entire subphylum
31 July 2019 by
A. Labella
and
others
at
Vanderbilt University
Evolutionary Biology
Extensive loss of cell cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts
21 May 2019 by
J. Steenwyk
and
others
at
Vanderbilt University
Evolutionary Biology
Characterizing the pathogenic, genomic, and chemical traits of Aspergillus fischeri, the closest sequenced relative of the major human fungal pathogen Aspergillus fumigatus
20 February 2019 by
M. Mead
and
others
at
Vanderbilt University
Microbiology
integRATE: a desirability-based data integration framework for the prioritization of candidate genes across heterogeneous omics and its application to preterm birth
19 November 2018 by
H. Eidem
and
others
at
Vanderbilt University
Genomics
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Evolutionary Biology
Microbiology
Bioinformatics
Molecular Biology
Genomics