Articles by A. V. Sastry | Synthical

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15

Mining all publicly available expression data to compute dynamic microbial transcriptional regulatory networks

23 October 2024 by A. Sastry and others at

Proteome allocation is linked to transcriptional regulation through a modularized transcriptome

19 June 2024 by Anirudh Patel and others at

University of San Diego

Elucidation of independently modulated genes in Streptococcus pyogenes reveals carbon sources that control its expression of hemolytic toxins

6 June 2023 by Yasushi Hirose and others

Coordination of CcpA and CodY regulators in Staphylococcus aureus USA300 strains

2 November 2022 by Sujan Poudel and others at

Advanced transcriptomic analysis reveals the role of efflux pumps and media composition in antibiotic responses of Pseudomonas aeruginosa

6 September 2022 by Anshul Rajput and others at

Systems Biology

Machine-learning from Pseudomonas putida transcriptomes reveals its transcriptional regulatory network

27 April 2022 by H. Lim and others at

Systems Biology

Machine learning of all Mycobacterium Tuberculosis H37Rv RNA-seq data reveals complex interplay between metabolism, stress response, and infection

21 March 2022 by Raymond Yoo and others at

Systems Biology

Optimal dimensionality selection for independent component analysis of transcriptomic data

8 December 2021 by J. Mcconn and others at

Machine learning uncovers a data-driven transcriptional regulatory network for the Crenarchaeal thermoacidophile Sulfolobus acidocaldarius

27 October 2021 by S. Chauhan and others at

Systems Biology

Matrix factorization recovers consistent regulatory signals from disparate datasets

2 February 2021 by A. Sastry and others at

Machine learning uncovers independently regulated modules in the Bacillus subtilis transcriptome

11 December 2020 by K. Rychel and others at

Systems Biology

Elucidation of regulatory modes for five two-component systems in Escherichia coli reveals novel relationships

9 November 2020 by K. Choudhary and others at

Systems Biology

iModulonDB: a knowledgebase of microbial transcriptional regulation derived from machine learning

16 September 2020 by K. Rychel and others at

Systems Biology

Revealing 29 sets of independently modulated genes in Staphylococcus aureus, their regulators and role in key physiological responses

3 July 2020 by Sujan Poudel and others at

The Escherichia coli Transcriptome Consists of Independently Regulated Modules

4 December 2019 by A. Sastry and others at

Systems Biology

Adaptive laboratory evolution of Escherichia coli under acid stress

18 October 2019 by Bodong Du and others

Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655

23 August 2018 by Y. Gao and others at

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Systems Biology Microbiology Bioinformatics