Articles by Bryan C. Daniels | Synthical

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21

Difficult control is related to instability in biologically inspired Boolean networks

9 October 2024 by Bryan Daniels and Enrico Borriello

Molecular Networks

Continuous Attractor Networks for Laplace Neural Manifolds

20 August 2024 by Bryan Daniels and Marc Howard

Neurons and Cognition

Phase Transitions and Criticality in the Collective Behavior of Animals -- Self-organization and biological function

7 November 2022 by Pawel Romanczuk and Bryan Daniels

Biological Physics, Soft Condensed Matter

The basis of easy controllability in Boolean networks

9 September 2021 by Enrico Borriello and Bryan Daniels

Molecular Networks

Subcritical escape waves in schooling fish

12 August 2021 by Winnie Poel and others

Biological Physics

Discovering sparse control strategies in C. elegans

2 August 2021 by Edward Lee and others

Neurons and Cognition

Quantifying dynamical high-order interdependencies from the O-information: an application to neural spiking dynamics

31 July 2020 by Sebastiano Stramaglia and others

Neurons and Cognition

A scaling theory of armed conflict avalanches

29 April 2020 by Edward Lee and others

Physics and Society

Emergent regularities and scaling in armed conflict data

30 March 2019 by Edward Lee and others

Physics and Society, Statistical Mechanics

Quantifying the impact of network structure on speed and accuracy in collective decision-making

22 March 2019 by Bryan Daniels and Pawel Romanczuk

Neurons and Cognition, Social and Information Networks

Convenient Interface to Inverse Ising (ConIII): A Python 3 Package for Solving Ising-Type Maximum Entropy Models

11 March 2019 by Edward Lee and Bryan Daniels

Quantitative Methods, Statistical Mechanics

Automated, predictive, and interpretable inference of C. elegans escape dynamics

25 September 2018 by Bryan Daniels and others

Neurons and Cognition, Quantitative Methods

Logic and connectivity jointly determine criticality in biological gene regulatory networks

3 May 2018 by Bryan Daniels and others

Molecular Networks

Control of critical behavior in a small-scale social system

14 January 2016 by Bryan Daniels and others

Physics and Society, Biological Physics

Sloppiness and Emergent Theories in Physics, Biology, and Beyond

30 January 2015 by Mark Transtrum and others

Statistical Mechanics, Data Analysis, Statistics and Probability

Efficient inference of parsimonious phenomenological models of cellular dynamics using S-systems and alternating regression

16 June 2014 by Bryan Daniels and Ilya Nemenman

Quantitative Methods

Automated adaptive inference of coarse-grained dynamical models in systems biology

24 April 2014 by Bryan Daniels and Ilya Nemenman

Quantitative Methods, Data Analysis, Statistics and Probability

Nucleation at the DNA supercoiling transition

6 February 2011 by Bryan Daniels and James Sethna

Biological Physics, Biomolecules

Discontinuities at the DNA supercoiling transition

21 July 2009 by Bryan Daniels and others

Statistical properties of multistep enzyme-mediated reactions

20 November 2008 by Wiet H. De Ronde and others

Quantitative Methods, Molecular Networks

Sloppiness, robustness, and evolvability in systems biology

19 May 2008 by Bryan Daniels and others

Quantitative Methods

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Topics

Quantitative Methods Neurons and Cognition Molecular Networks Biological Physics Physics and Society Statistical Mechanics Populations and Evolution Machine Learning Data Analysis, Statistics and Probability Biomolecules Soft Condensed Matter Adaptation and Self-Organizing Systems Social and Information Networks Computational Physics